Metrics
1 Download
Share Dataset

Share this dataset on your favorite social media networks.

Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data

Version 1.0

Kubiak, Dawid; Szcześniak, Michał, 2024, "Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data", https://doi.org/10.18150/CNRODW, RepOD, V1

Learn about Data Citation Standards.

Description

Title of Dataset: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data

The datasets contain data from RNA-seq analysis of 9 libraries obtained from narrow-leafed lupin (Lupinus angustifolius) roots grown under physiological conditions, 15-hour hypoxia and 6-hour reoxygenation, described in publication 'Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules'.


Authors:

Dawid Jakub Kubiak, 1 (dawidk@doktorant.umk.pl)

Michal Wojciech Szczesniak, 2 


Institutions:

1. Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland

2. Institute of Human Biology and Evolution, Faculty of Biology, Adam Mickiewicz University, Poznan 61-614, Poland


Date of data collection: 2023


Geographic location of data collection: Poland


Keywords: stress granules, hypoxia, lupinus, transcriptome


Language information: English


Information about funding sources that supported the collection of the data: National Science Center Poland, grant PRELUDIUM; 2022/45/N/NZ9/04015


SHARING/ACCESS INFORMATION

Licenses/restrictions placed on the data: CC0


DATA & FILE OVERVIEW

File List:

1_H_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in control versus hypoxia samples in .txt format)

2_H_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for dwon-regulated genes in control versus hypoxia samples in .txt format)

3_R_vs_H_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus hypoxia samples in .txt format)

4_R_vs_H_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus hypoxia samples in .txt format)

5_R_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus control samples in .txt format)

6_R_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus control samples in .txt format)

7_A.thaliana orthologs (File contains orthologues of lupinus angustifolius genes in the model plant A.thaliana in .txt format)

8_K-1 (File contains reports summarizing the results of sequencing for control sample in .pdf format)

9_H-1 (File contains reports summarizing the results of sequencing for hypoxia sample in .pdf format)

10_R-1 (File contains reports summarizing the results of sequencing for reoxygenation sample in .pdf format)


METHODOLOGICAL INFORMATION

Description of methods used for collection/generation of data: All methods are described in the article: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules Dawid Jakub Kubiak, Michal Wojciech Szczesniak, Karolina Ostrowska, Dawid Bielewicz, Susheel Sagar Bhat, Katarzyna Niedojadlo, Zofia Szweykowska-Kulinska, Artur Jarmolowski, Rupert George Fray, Janusz Niedojadlo bioRxiv 2023.12.14.569339; doi: https://doi.org/10.1101/2023.12.14.569339


Abbreviation list: K - control condition, H - 15h hypoxia, R - 15h hypoxia followed by 6h reoxygenation

(2023)
Subject
Agricultural Sciences; Medicine, Health and Life Sciences
Keyword

stress granules, hypoxia, lupinus, epitranscriptome, m6A, transcriptome

Related Publication

Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules
Dawid Jakub Kubiak, Michal Wojciech Szczesniak, Karolina Ostrowska, Dawid Bielewicz, Susheel Sagar Bhat, Katarzyna Niedojadlo, Zofia Szweykowska-Kulinska, Artur Jarmolowski, Rupert George Fray, Janusz Niedojadlo doi: https://doi.org/10.1101/2023.12.14.569339

CC0 Creative Commons Zero 1.0 CC0 Creative Commons Zero 1.0

Find
1 to 10 of 11 Files

  Select all 11 files in this dataset.  

1_H_vs_K_up_genes_1.txt
Plain Text - 4.6 KB - Mar 5, 2024 - 1 Download
MD5: 927d52e48c2f9573a129e8053edbb174
License: CC0 Creative Commons Zero 1.0
Preview
Download
2_H_vs_K_down_genes_1.txt
Plain Text - 20.7 KB - Mar 5, 2024 - 0 Downloads
MD5: 6647f5f8c75cb22d4dbeb36c338f4c10
License: CC0 Creative Commons Zero 1.0
Preview
Download
3_R_vs_H_up_genes_1.txt
Plain Text - 16.9 KB - Mar 5, 2024 - 0 Downloads
MD5: 683d4f2c96b51e6aa2ba3724119f2e8d
License: CC0 Creative Commons Zero 1.0
Preview
Download
4_R_vs_H_down_genes_1.txt
Plain Text - 5.3 KB - Mar 5, 2024 - 0 Downloads
MD5: 38369de8ab5bdad358d9bb6515a615fe
License: CC0 Creative Commons Zero 1.0
Preview
Download
5_R_vs_K_up_genes_1.txt
Plain Text - 10.3 KB - Mar 5, 2024 - 0 Downloads
MD5: 10ed3aace4acb47a5135abfd4567d353
License: CC0 Creative Commons Zero 1.0
Preview
Download
6_R_vs_K_down_genes_1.txt
Plain Text - 16.3 KB - Mar 5, 2024 - 0 Downloads
MD5: d6b8aeb6df44124381d93b65ba79f6dc
License: CC0 Creative Commons Zero 1.0
Preview
Download
7_A.thaliana orthologs_1.txt
Plain Text - 1.3 MB - Mar 5, 2024 - 0 Downloads
MD5: ce96a275b48f77436f094d33c987cfe6
License: CC0 Creative Commons Zero 1.0
Preview
Download
8_K-1.pdf
Adobe PDF - 1.3 MB - Mar 5, 2024 - 0 Downloads
MD5: 36da4fcc12a6a2904bfc1432400b9117
License: CC0 Creative Commons Zero 1.0
Preview
Download
9_H-1.pdf
Adobe PDF - 1.3 MB - Mar 5, 2024 - 0 Downloads
MD5: 8094a56c223010b16fc8d78f8872f47a
License: CC0 Creative Commons Zero 1.0
Preview
Download
10_R-1.pdf
Adobe PDF - 1.3 MB - Mar 5, 2024 - 0 Downloads
MD5: b4f13c6382a7f14ce475774e93240a39
License: CC0 Creative Commons Zero 1.0
Preview
Download
Select File(s)

Please select a file or files to be deleted.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Select File(s)

Please select a file or files to be edited.

Select File(s)

Please select a file or files to be edited.

Select File(s)

Please select a file or files to be edited.

Edit license

For selected file(s) set a license to

Select File(s)

Please select a file or files to be downloaded.

Select File(s)

Please select a file or files for access request.

Select File(s)

Please select restricted file(s) to be unrestricted.

Request Access

  You need to Log In/Sign Up to request access to this file.

Continue
Dataset Terms

Please confirm and/or complete the information needed below in order to continue.

Asterisks indicate required fields

Request Access

Access to file(s) subject to additional consent under following conditions:

Accept
Package File Download
Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Embargo

Embargo

Are you sure you want to lift the embargo?

Once you lift the embargo, you will not be able to set it again.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Dataset Private URL

Use a Private URL to allow those without Dataverse accounts to access your dataset. For more information about the Private URL feature, please refer to the User Guide.

Private URL has not been created.

Dataset Private URL

Are you sure you want to disable the Private URL? If you have shared the Private URL with others they will no longer be able to use it to access your dataset.

Submit for Review

You will not be able to make changes to this dataset while it is in review.

Submit
Publish Dataset

This dataset cannot be published until Biological sciences is published. Would you like to publish both right now?

Once you publish this dataset it must remain published.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Publish Dataset

This dataset cannot be published until Biological sciences is published by its administrator.

Publish Dataset

This dataset cannot be published until Biological sciences and Uniwersytet Mikołaja Kopernika w Toruniu are published.

Return for modification


Send a copy of this message to the return e-mail address.
OK
Deaccession Dataset

Are you sure you want to deaccession? The selected version(s) will no longer be viewable by the public.