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Broadband collision-induced dissociation mass spectrometry imaging

Version 1.0

Krupa, Sumi, 2025, "Broadband collision-induced dissociation mass spectrometry imaging", https://doi.org/10.18150/XSUCCF, RepOD, V1

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Description

The attached data includes the results of LARAPPI/CI (Laser Ablation Remote Atmospheric Pressure Photoionization/Chemical Ionization)-3D-MSI in the bbCID mode, performed employing an ultrahigh resolution QToF (quadrupole-time-of-flight) mass spectrometer Bruker Impact II.

The first file, BC_MSbbCID.d.zip, contains spectral and spatial data from the MSI-bbCID analysis of a blader cancer tissue and healthy bladder tissue placed next to each other.

The second file, RCC_MSbbCID.d.zip, contains spectral and spatial data from the MSI-bbCID analysis of adjacent kidney cancer tissue and healthy kidney tissue.

The third file, dyes_thymidine_MSbbCID.d.zip, contains spectral and spatial data from the MSI-bbCID analysis of a paper sample with three dye solutions and a thymidine solution.

All of the attached files contain raw 2D MS and MS/MS data in .d format, and can be opened using an open-source R package that is freely available.

More details about reading Bruker's .d folders with R packages can be found e.g. here: https://www.rdocumentation.org/packages/specmine/versions/3.1.6/topics/read_Bruker_files


(2025)
Subject
Chemistry; Engineering; Medicine, Health and Life Sciences
Keyword

tandem mass spectrometry, mass spectrometry imaging, metabolomics, tissue imaging, molecular imaging

Related Publication

Sumi Krupa, Wiktoria Szuberla, Joanna Nizioł, Anna Ossolińska, Krzysztof Ossoliński, Tomasz Ruman, 2025, Broadband Collision-Induced Dissociation Mass Spectrometry Imaging, Journal of the American Society for Mass Spectrometry https://doi.org/10.1021/jasms.5c00045 doi: 10.1021/jasms.5c00045

CC0 Creative Commons Zero 1.0 CC0 Creative Commons Zero 1.0

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1 to 3 of 3 Files
BC_MSbbCIID.d.zip
ZIP Archive - 2.9 GB - Jun 27, 2025 - 0 Downloads
MD5: 970a07a617147e85bb0d24180770bc9f
License: CC0 Creative Commons Zero 1.0
This file contains spectral and spatial data from the MSI-bbCID analysis of a blader cancer tissue and healthy bladder tissue placed next to each other. The file contains raw 2D MS and MS/MS data in .d format, and can be opened using an open-source R package that is freely available.
Download
RCC_MSbbCID.d.zip
ZIP Archive - 4.1 GB - Jun 27, 2025 - 0 Downloads
MD5: 4bf76f26d5f17c8eba71d1c7e0220ec3
License: CC0 Creative Commons Zero 1.0
This file contains spectral and spatial data from the MSI-bbCID analysis of adjacent kidney cancer tissue and healthy kidney tissue. The file contains raw 2D MS and MS/MS data in .d format, and can be opened using an open-source R package that is freely available.
Download
dyes_thymidine_MSbbCID.d.zip
ZIP Archive - 3.4 GB - Jun 27, 2025 - 0 Downloads
MD5: 9c074411f476a8c91f976394fb14ac8e
License: CC0 Creative Commons Zero 1.0
This file contains spectral and spatial data from the MSI-bbCID analysis of a paper sample with three dye solutions and a thymidine solution. The file contains raw 2D MS and MS/MS data in .d format, and can be opened using an open-source R package that is freely available.
Download
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