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Kaźmierkiewicz, Alicja Anna, 2025, "Twi alignments of Microtus obscurus and Microtus arvalis mtDNA sequences, and scripts used to generate PSMC simulations for M. obscurus", https://doi.org/10.18150/UVE1CK, RepOD, V1
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Dataset contains two alignments of mtDNA sequences (4.3kb and cytochrome b) used for phylogenetic reconstruction in the Altai vole research, as well as two scripts:
quantify_split_time_Microtus_obscurus.py - the script can be executed using Python software, it generates the input file for msprime (https://tskit.dev/msprime/docs/latest/intro.html)
simulatio_Microtus_obscurus.batch - the script can be read in text editor, it's the main msprime (https://tskit.dev/msprime/docs/latest/intro.html) script used to generate PSMC simulations
Paper citation & DOI provided upon acceptance.
Microtus, ancient DNA, effective population size, small mammals, Mikulino, Eemian, divergence
CC0 Creative Commons Zero 1.0
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