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Fig2.zip
ZIP Archive - 206.5 MB - Apr 19, 2023 - 12 DownloadsMD5: 6ece7464d78bd78f8709182264cf3c00
License: CC0 Creative Commons Zero 1.0
file "Figure2.zip" Contains a list of files to plot a bifurcation diagram for three coupled CSTRs in a cyclic array for sigma_inh=80 s-1, sigma_M =200 s-1, kd=0.1 s-1, ny = 1.84 s-1.
contains files: "hcontplt.s" contains data set for stable Hopf bifurcation curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient,column #9 represents omega which is associated with a bifurcation eigenvalue i*omega, column #10 represents an arch (see manual for program CONT), column #11 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"hcontplt.u" contains data set for unstable Hopf bifurcation curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient,column #9 represents omega which is associated with a bifurcation eigenvalue i*omega, column #10 represents an arch (see manual for program CONT), column #11 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"hcontplt (2).s" contains data set for stable Hopf bifurcation curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient,column #9 represents omega which is associated with a bifurcation eigenvalue i*omega, column #10 represents an arch (see manual for program CONT), column #11 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"hcontplt (2).u" contains data set for unstable Hopf bifurcation curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient,column #9 represents omega which is associated with a bifurcation eigenvalue i*omega, column #10 represents an arch (see manual for program CONT), column #11 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"bcontplt.u" contains data set for unstable branch point curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"bcontplt (2).u" contains data set for unstable branch point curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"lcontplt.u" contains data set for unstable limit point curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"lcontplt (2).u" contains data set for unstable limit point curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents stability sign (-1 is stable, +1 unstable, 0 stability changing bifurcation point).
"hh (2).b" contains data points for intersection of two Hopf bifurcation curves, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents omega which is associated with a bifurcation eigenvalue i*omega,column #10 represents an arch (see manual for program CONT), column #11 represents bifurcation point type.
"hvlinter.b" contains data points for intersection of Hopf bifurcation curve with branch/limit point curve, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient, column #8 represents autoctalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents bifurcation point type; for 11 column version, the additional column #9 represents omega which is associated with a bifurcation eigenvalue i*omega
"bt.b" contains data points of Bogdanov-Takens bifurcation, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents bifurcation point type.
"bt (2).b" contains data points of Bogdanov-Takens bifurcation, odd columns represent stationary concentrations of ATP in cells from 1 to 3(last column is column #5), even columns represent stationary concentrations of ADP in cells from 1 to 3(last column is column #6), column #7 represents inhibition rate coeffient,column #8 represents autocatalysis rate coeffient, column #9 represents an arch (see manual for program CONT), column #10 represents bifurcation point type.
"mustr.gnu" - file for plotting the bifurcation diagram in Gnuplot | |