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Mitochondrial transcriptome of C. albicans -- direct RNA sequencing data

Version 5.0

Piatkowski, Jakub, 2024, "Mitochondrial transcriptome of C. albicans -- direct RNA sequencing data", https://doi.org/10.18150/EDN8ZG, RepOD, V5

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Description

Raw data from Nanopore sequencing of C. albicans mitochondrial RNA. Runs are as follows:

-WT C. albicans:

WT_17032022

WT_28062022

-ribodepleted WT C. albicans:

WT_RD_01022024

-FTO treated WT C. albicans:

WT_FTO_310823

-bisulfite-treated WT C. albicans:

WT_bis_12032024

WT_bis_09022024 (test run on a flongle flowcell)

-IVT runs:

SYNT_13102022 (w/o the TU1 fragment containing NAD6 and NAD1)

SYNT_TU1b_21092023 (additional sequencing run for NAD6 and NAD1 fragment)

-bisulfite-treated IVT RNA

SYNT_bis_19032024

-delPET127 C. albicans:

PET_17052022

PET_18052022

-delDSS1 C. albicans:

DSS_11102022

DSS_12102022

-FASTQ.zip contains .fastq files for all of the above (basecalled with Guppy)

-analysis_tools.zip contains scripts and commands, as well as configuration and reference files used in the analysis (along with a README file)

-raw data from each run is reposited as a separate .zip file. Larger files are divided into multipart archives.

(2024-05-07)

Subject

Medicine, Health and Life Sciences

Keyword

mitochondria, RNA, C.albicans, Nanopore

License

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1 to 10 of 22 Files

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			Download
		analysis_tools.zip ZIP Archive - 142.9 KB - Jul 17, 2024 - 4 Downloads MD5: 0d7d56679037f0dbf1685f15e366a699 License: CC BY - Creative Commons Attribution 4.0 Scripts, configuration files and references used in the analysis, along with a README file	Download
		DSS_11102022.zip ZIP Archive - 2.6 GB - May 8, 2024 - 0 Downloads MD5: 3a5be084d85c8290a010157e148e6b3d License: CC BY - Creative Commons Attribution 4.0	Download
		DSS_11102022.z01 ZIP Archive - 5.0 GB - May 8, 2024 - 2 Downloads MD5: 886b4a8cca1f3bf15382d78a56f67cb8 License: CC BY - Creative Commons Attribution 4.0	Download
		DSS_11102022.z02 Unknown - 5.0 GB - May 8, 2024 - 1 Download MD5: a9028f8dd1fad03e5c644d6ebb60a2c7 License: CC BY - Creative Commons Attribution 4.0	Download
		DSS_12102022.zip ZIP Archive - 1.5 GB - May 8, 2024 - 1 Download MD5: f4c1794c664d8d1bdfb4fa3be1bad5d8 License: CC BY - Creative Commons Attribution 4.0	Download
		PET_17052022.zip ZIP Archive - 930.3 MB - May 8, 2024 - 0 Downloads MD5: b476e02f7a11623122971e10f2913a60 License: CC0 Creative Commons Zero 1.0	Download
		PET_17052022.z01 ZIP Archive - 5.0 GB - May 8, 2024 - 0 Downloads MD5: 100d84bc2a8570c4fce6ba73c9eea79e License: CC BY - Creative Commons Attribution 4.0	Download
		PET_17052022.z02 Unknown - 5.0 GB - May 8, 2024 - 0 Downloads MD5: 7ddaa4d1a90a267eb09cdae8053e4923 License: CC BY - Creative Commons Attribution 4.0	Download
		PET_18052022.zip ZIP Archive - 936.4 MB - May 8, 2024 - 0 Downloads MD5: 6d1e3cbae88baaddd24cd2207d769023 License: CC BY - Creative Commons Attribution 4.0	Download
		SYNT_13102022.zip ZIP Archive - 4.4 GB - May 8, 2024 - 0 Downloads MD5: 769c6c4628e1837fa07c8f5e7109a5ac License: CC BY - Creative Commons Attribution 4.0	Download

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