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Tomographic data supporting the article: Microstructural design of the stalk in the crinoid Seirocrinus supports its pseudoplanktonic lifestyle

Version 1.0

Gorzelak, Przemysław, 2026, "Tomographic data supporting the article: Microstructural design of the stalk in the crinoid Seirocrinus supports its pseudoplanktonic lifestyle", https://doi.org/10.18150/6PIGZ7, RepOD, V1

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Description

Raw tomographic data associated with the article: “Microstructural design of the stalk in the crinoid Seirocrinus supports its pseudoplanktonic lifestyle” https://www.nature.com/articles/s41598-025-16412-8

TXM/TXRM (Transmission X-Ray Microscopy ) are proprietary microscopy data files created by ZEISS 3D X-Ray Microscopes (microCT systems). Tomography datasets that contain a collection of projections (2D images acquired at different angles around the axis of rotation) were saved as *.txrm file. Then, Reconstructor manually reconstructed images stored in *txrm file to form a set of reconstructed slices. A slice is a 2D section of the 3D reconstructed volume that is oriented in the X/Z plane. Slices generated from *.txrm file are stored in a *.txm file. 1

TXM/TXRM post-processing software:

Open Xradia - plugin for Fiji (ImageJ) for reading XRM, TXRM, TXM image files (from Xradia XRM systems), opens them as a stack.

(https://forum.image.sc/t/open-xradia-zeiss-microct-xrm-files-in-fiji/44466)

Dragonfly-Pro – visualization and analysis software using Python scripting exclusively from ZEISS.

Thermo Scientific Avizo Software for 3D visualization, analysis, and measurements of features of interest from imaging data.

TXM3DViewer – ZEISS software for viewing and analyzing 3D volumetric data.

(1) according to ZEISS Xradia Versas User Guide, File and File Storage, 2014-2016

Subject
Earth and Environmental Sciences
Keyword

Seirocrinus

Related Publication

Gorzelak, P., Janiszewska, K., Hoşgör, İ. et al. Microstructural design of the stalk in the crinoid Seirocrinus supports its pseudoplanktonic lifestyle. Sci Rep 15, 31418 (2025). https://doi.org/10.1038/s41598-025-16412-8 https://www.nature.com/articles/s41598-025-16412-8#citeas doi: https://doi.org/10.1038/s41598-025-16412-8

CC BY - Creative Commons Attribution 4.0 CC BY - Creative Commons Attribution 4.0

1 File
seirocrinus.txm
Unknown - 529.0 MB - Mar 17, 2026 - 0 Downloads
MD5: aca318c098f74c1157850f46b3c5fd53
License: CC BY - Creative Commons Attribution 4.0
Raw tomographic data - TXM/TXRM (Transmission X-Ray Microscopy ) are proprietary microscopy data files created by ZEISS 3D X-Ray Microscopes
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